| ACL 2014 CD | WORKSHOP ON CD | ACL 2014 ONLINE | ACL ONLINE |
WORKSHOP PROGRAM
Thursday, June 26, 2014 | |
| 9:00–9:10 | Opening remarks |
| Session 1: Processing biomedical publications | |
| 9:10–9:30 | Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick Wallstrom and Graciela Gonzalez |
| 9:30–9:50 | Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature Negacy Hailu, Natalya Panteleyeva and Kevin Cohen |
| 9:50–10:10 | Classifying Negative Findings in Biomedical Publications Bei Yu |
| 10:10–10:30 | Automated Disease Normalization with Low Rank Approximations Robert Leaman and Zhiyong Lu |
| 10:30–11:00 | Coffee Break |
| Keynote by Junichi Tsujii | |
| 11:00–11:50 | BioNLP as the Pioneering field of linking text, knowledge and data |
| Session 2: Processing consumer language | |
| 11:50–12:10 | Decomposing Consumer Health Questions Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman and Dina Demner-Fushman |
| 12:10–12:30 | Detecting Health Related Discussions in Everyday Telephone Conversations for Studying Medical Events in the Lives of Older Adults Golnar Sheikhshab, Izhak Shafran and Jeffrey Kaye |
| 12:30–14:00 | Lunch |
| Session 3: Processing clinical text and gray literature | |
| 14:00–14:20 | Coreference Resolution for Structured Drug Product Labels Halil Kilicoglu and Dina Demner-Fushman |
| 14:20–14:40 | Generating Patient Problem Lists from the ShARe Corpus using SNOMED CT/SNOMED CT CORE Problem List Danielle Mowery, Mindy Ross, Sumithra Velupillai, Stephane Meystre, Janyce Wiebe and Wendy Chapman |
| 14:40–15:00 | A System for Predicting ICD-10-PCS Codes from Electronic Health Records Michael Subotin and Anthony Davis |
| 15:00–15:20 | Structuring Operative Notes using Active Learning Kirk Roberts, Sanda Harabagiu and Michael Skinner |
| 15:30–16:00 | Afternoon Break |
| 16:00–16:20 | Chunking Clinical Text Containing Non-Canonical Language Aleksandar Savkov, John Carroll and Jackie Cassell |
| 16:20–16:40 | Decision Style in a Clinical Reasoning Corpus Limor Hochberg, Cecilia Ovesdotter Alm, Esa M. Rantanen, Caroline M. DeLong and Anne Haake |
| (16:40–17:30) Poster session | |
| Temporal Expressions in Swedish Medical Text – A Pilot Study Sumithra Velupillai | |
| A repository of semantic types in the MIMIC II database clinical notes Richard Osborne, Alan Aronson and Kevin Cohen | |
| Extracting drug indications and adverse drug reactions from Spanish health social media Isabel Segura-Bedmar, Santiago de la Peña González and Paloma Martínez | |
| Symptom extraction issue Laure Martin, Delphine Battistelli and Thierry Charnois | |
| Seeking Informativeness in Literature Based Discovery Judita Preiss | |
| Towards Gene Recognition from Rare and Ambiguous Abbreviations using a Filtering Approach Matthias Hartung, Roman Klinger, Matthias Zwick and Philipp Cimiano | |
| FFTM: A Fuzzy Feature Transformation Method for Medical Documents Amir Karami and Aryya Gangopadhyay | |
Friday, June 27, 2014 | |
| Session 1: NLP approaches for assessment of clinical conditions | |
| 9:00–9:40 | Using statistical parsing to detect agrammatic aphasia Kathleen C. Fraser, Graeme Hirst, Jed A. Meltzer, Jennifer E. Mack and Cynthia K. Thompson |
| Panel: Life cycles of BioCreative, BioNLP-ST, i2b2, TREC Medical tracks, and ShARe /CLEF/ SemEval | |
| 9:40–10:05 | BioCreative by Lynette Hirschman and John Wilbur |
| 10:05–10:30 | BioNLP-ST by Sophia Ananiadou and Junichi Tsujii |
| 10:30–11:00 | Coffee Break |
| 11:00–11:25 | TREC Medical tracks by Ellen Voorhees |
| 11:25–11:50 | i2b2 by Ozlem Uzuner |
| 11:50–12:10 | ShARe/CLEF/SemEval by Danielle Mowery, Sumithra Velupillai and Sameer Pradhan |
| 12:10–12:30 | Discussion |
| 12:30–14:00 | Lunch |
| Tutorials | |
| 14:00–15:30 | UMLS in biomedical text processing by Olivier Bodenreider |
| 15:30–16:00 | Afternoon Break |
| 16:00–17:30 | Using MetaMap by Alan R. Aronson |